Package molcrawl

Scripts module for data preparation, evaluation, and utilities.

This module contains various scripts for: - Data preparation (preparation/) - Model evaluation (evaluation/) - Debugging and testing (debug/) - Verification utilities (verification/)

Sub-modules

molcrawl.bert

molcrawl.chemberta2

molcrawl.compounds

molcrawl.config

Shared configuration package.

molcrawl.core

molcrawl.debug

Debug utilities and test scripts.

molcrawl.dnabert2

molcrawl.esm2

molcrawl.evaluation

Model evaluation scripts for various tasks and models.

molcrawl.experiment_tracker

Experiment Tracking System A module that centrally manages the execution status, results, and logs of each process

molcrawl.genome_sequence

molcrawl.gpt2

molcrawl.molecule_nat_lang

Molecule-related natural language package.

molcrawl.preparation

Data preparation scripts for various datasets.

molcrawl.protein_sequence

Protein sequence package.

molcrawl.rna

molcrawl.rnaformer

molcrawl.utils

Shared utility package.